Work

Development of a deconvolution pipeline for bulk RNA-seq data for Follicular Lymphoma

scRNA-seq
R programming
Follicular Lymphoma
Deconvolution

Bulk RNA-seq deconvolution pipeline

Developed a deconvolution pipeline to estimate cell-type proportions in bulk RNA-seq data using single-cell RNA-seq reference atlases. The project focused on follicular lymphoma and involved conducting a comprehensive literature review, implementing BayesPrism and MuSiC deconvolution methods, and constructing a custom reference atlas. Performance was evaluated using simulations, focusing on cell population granularity, gene signature similarity, and computational efficiency.

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